Filtros : "Miyano, Satoru" Limpar

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  • Source: Scientific Reports. Unidade: IME

    Subjects: BIOINFORMÁTICA, NEOPLASIAS PULMONARES

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      NAKATA, Asuka et al. Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs. Scientific Reports, v. 5, 2015Tradução . . Disponível em: https://doi.org/10.1038/srep13076. Acesso em: 05 jun. 2024.
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      Nakata, A., Yoshida, R., Yamaguchi, R., Yamauchi, M., Tamada, Y., Fujita, A., et al. (2015). Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs. Scientific Reports, 5. doi:10.1038/srep13076
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      Nakata A, Yoshida R, Yamaguchi R, Yamauchi M, Tamada Y, Fujita A, Shimamura T, Imoto S, Higuchi T, Nomura M, Kimura T, Nokihara H, Higashiyama M, Kondoh K, Nishihara H, Tojo A, Yano S, Miyano S, Gotoh N. Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs [Internet]. Scientific Reports. 2015 ; 5[citado 2024 jun. 05 ] Available from: https://doi.org/10.1038/srep13076
    • Vancouver

      Nakata A, Yoshida R, Yamaguchi R, Yamauchi M, Tamada Y, Fujita A, Shimamura T, Imoto S, Higuchi T, Nomura M, Kimura T, Nokihara H, Higashiyama M, Kondoh K, Nishihara H, Tojo A, Yano S, Miyano S, Gotoh N. Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs [Internet]. Scientific Reports. 2015 ; 5[citado 2024 jun. 05 ] Available from: https://doi.org/10.1038/srep13076
  • Source: Transcription factor regulatory networks: methods and protocols. Unidade: IME

    Subjects: BIOINFORMÁTICA, ANÁLISE DE SÉRIES TEMPORAIS, ANÁLISE MULTIVARIADA

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      FUJITA, André e MIYANO, Satoru. A tutorial to identify nonlinear associations in gene expression time series data. Transcription factor regulatory networks: methods and protocols. Tradução . New York: Humana Press, 2014. . Disponível em: https://doi.org/10.1007/978-1-4939-0805-9_8. Acesso em: 05 jun. 2024.
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      Fujita, A., & Miyano, S. (2014). A tutorial to identify nonlinear associations in gene expression time series data. In Transcription factor regulatory networks: methods and protocols. New York: Humana Press. doi:10.1007/978-1-4939-0805-9_8
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      Fujita A, Miyano S. A tutorial to identify nonlinear associations in gene expression time series data [Internet]. In: Transcription factor regulatory networks: methods and protocols. New York: Humana Press; 2014. [citado 2024 jun. 05 ] Available from: https://doi.org/10.1007/978-1-4939-0805-9_8
    • Vancouver

      Fujita A, Miyano S. A tutorial to identify nonlinear associations in gene expression time series data [Internet]. In: Transcription factor regulatory networks: methods and protocols. New York: Humana Press; 2014. [citado 2024 jun. 05 ] Available from: https://doi.org/10.1007/978-1-4939-0805-9_8
  • Source: Bioinformatics. Unidade: IME

    Assunto: PROGRAMAÇÃO INTEIRA E FLUXOS EM REDE

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      NAGASAKI, Masao et al. XiP: a computational environment to create, extend and share workflows. Bioinformatics, v. 29, n. 1, p. 137-139, 2013Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/bts630. Acesso em: 05 jun. 2024.
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      Nagasaki, M., Fujita, A., Sekiya, Y., Saito, A., Ikeda, E., Li, C., & Miyano, S. (2013). XiP: a computational environment to create, extend and share workflows. Bioinformatics, 29( 1), 137-139. doi:10.1093/bioinformatics/bts630
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      Nagasaki M, Fujita A, Sekiya Y, Saito A, Ikeda E, Li C, Miyano S. XiP: a computational environment to create, extend and share workflows [Internet]. Bioinformatics. 2013 ; 29( 1): 137-139.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1093/bioinformatics/bts630
    • Vancouver

      Nagasaki M, Fujita A, Sekiya Y, Saito A, Ikeda E, Li C, Miyano S. XiP: a computational environment to create, extend and share workflows [Internet]. Bioinformatics. 2013 ; 29( 1): 137-139.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1093/bioinformatics/bts630
  • Source: BMC Genomics. Unidade: IME

    Assunto: GENOMAS

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      KOJIMA, Kaname et al. Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genomics, v. 13, p. 1-14, 2012Tradução . . Disponível em: https://doi.org/10.1186/1471-2164-13-S1-S6. Acesso em: 05 jun. 2024.
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      Kojima, K., Imoto, S., Yamaguchi, R., Fujita, A., Yamaouchi, M., Gotoh, N., & Miyano, S. (2012). Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genomics, 13, 1-14. doi:10.1186/1471-2164-13-S1-S6
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      Kojima K, Imoto S, Yamaguchi R, Fujita A, Yamaouchi M, Gotoh N, Miyano S. Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing [Internet]. BMC Genomics. 2012 ; 13 1-14.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1471-2164-13-S1-S6
    • Vancouver

      Kojima K, Imoto S, Yamaguchi R, Fujita A, Yamaouchi M, Gotoh N, Miyano S. Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing [Internet]. BMC Genomics. 2012 ; 13 1-14.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1471-2164-13-S1-S6
  • Source: BMC Systems Biology. Unidade: IME

    Subjects: BIOQUÍMICA, ANÁLISE DE DADOS

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      FUJITA, André et al. Functional clustering of time series gene expression data by Granger causality. BMC Systems Biology, v. 6, n. 137, p. 1-12, 2012Tradução . . Disponível em: https://doi.org/10.1186/1752-0509-6-137. Acesso em: 05 jun. 2024.
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      Fujita, A., Severino, P., Kaname, K., Sato, J. R., Patriota, A. G., & Miyano, S. (2012). Functional clustering of time series gene expression data by Granger causality. BMC Systems Biology, 6( 137), 1-12. doi:10.1186/1752-0509-6-137
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      Fujita A, Severino P, Kaname K, Sato JR, Patriota AG, Miyano S. Functional clustering of time series gene expression data by Granger causality [Internet]. BMC Systems Biology. 2012 ; 6( 137): 1-12.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1752-0509-6-137
    • Vancouver

      Fujita A, Severino P, Kaname K, Sato JR, Patriota AG, Miyano S. Functional clustering of time series gene expression data by Granger causality [Internet]. BMC Systems Biology. 2012 ; 6( 137): 1-12.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1752-0509-6-137
  • Source: Bioinformatics. Unidade: IME

    Assunto: BIOINFORMÁTICA

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      NAGASAWA, Masao et al. Systems biology model repository for macrophage pathway simulation. Bioinformatics, v. 27, n. 11, p. 1591-1593, 2011Tradução . . Disponível em: https://doi.org/10.1093/bioinformatics/btr173. Acesso em: 05 jun. 2024.
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      Nagasawa, M., Saito, A., Fujita, A., Tremmel, G., Ueno, K., Ikeda, E., et al. (2011). Systems biology model repository for macrophage pathway simulation. Bioinformatics, 27( 11), 1591-1593. doi:10.1093/bioinformatics/btr173
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      Nagasawa M, Saito A, Fujita A, Tremmel G, Ueno K, Ikeda E, Jeong E, Miyano S. Systems biology model repository for macrophage pathway simulation [Internet]. Bioinformatics. 2011 ; 27( 11): 1591-1593.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1093/bioinformatics/btr173
    • Vancouver

      Nagasawa M, Saito A, Fujita A, Tremmel G, Ueno K, Ikeda E, Jeong E, Miyano S. Systems biology model repository for macrophage pathway simulation [Internet]. Bioinformatics. 2011 ; 27( 11): 1591-1593.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1093/bioinformatics/btr173
  • Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics. Unidades: IME, IQ

    Subjects: REGULAÇÃO GÊNICA, BIOQUÍMICA

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      FUJITA, André et al. Inferring contagion in regulatory networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, v. 8, n. 2, p. 570-576, 2011Tradução . . Disponível em: https://doi.org/10.1109/tcbb.2010.40. Acesso em: 05 jun. 2024.
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      Fujita, A., Sato, J. R., Demasi, M. A. A., Yamaguchi, R., Shimamura, T., Ferreira, C. E., et al. (2011). Inferring contagion in regulatory networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8( 2), 570-576. doi:10.1109/tcbb.2010.40
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      Fujita A, Sato JR, Demasi MAA, Yamaguchi R, Shimamura T, Ferreira CE, Sogayar MC, Miyano S. Inferring contagion in regulatory networks [Internet]. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2011 ; 8( 2): 570-576.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1109/tcbb.2010.40
    • Vancouver

      Fujita A, Sato JR, Demasi MAA, Yamaguchi R, Shimamura T, Ferreira CE, Sogayar MC, Miyano S. Inferring contagion in regulatory networks [Internet]. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2011 ; 8( 2): 570-576.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1109/tcbb.2010.40
  • Conference titles: Brazilian Symposium on Bioinformatics- BSB. Unidade: IME

    Subjects: INTELIGÊNCIA ARTIFICIAL, BIOINFORMÁTICA

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      Advances in bioinformatics and computational biology. . Berlin: Springer. Disponível em: https://doi.org/10.1007/978-3-642-15060-9. Acesso em: 05 jun. 2024. , 2010
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      Advances in bioinformatics and computational biology. (2010). Advances in bioinformatics and computational biology. Berlin: Springer. doi:10.1007/978-3-642-15060-9
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      Advances in bioinformatics and computational biology [Internet]. 2010 ;[citado 2024 jun. 05 ] Available from: https://doi.org/10.1007/978-3-642-15060-9
    • Vancouver

      Advances in bioinformatics and computational biology [Internet]. 2010 ;[citado 2024 jun. 05 ] Available from: https://doi.org/10.1007/978-3-642-15060-9
  • Source: Medical biostatistics for complex diseases. Unidades: IME, IQ

    Subjects: EXPRESSÃO GÊNICA, REGULAÇÃO GÊNICA, INFERÊNCIA BAYESIANA

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      FUJITA, André et al. An introduction to time‐varying connectivity estimation for gene regulatory networks. Medical biostatistics for complex diseases. Tradução . Weinheim: Wiley-Blackwell, 2010. . Disponível em: https://doi.org/10.1002/9783527630332.ch11. Acesso em: 05 jun. 2024.
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      Fujita, A., Sato, J. R., Demasi, M. A. A., Miyano, S., Sogayar, M. C., & Ferreira, C. E. (2010). An introduction to time‐varying connectivity estimation for gene regulatory networks. In Medical biostatistics for complex diseases. Weinheim: Wiley-Blackwell. doi:10.1002/9783527630332.ch11
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      Fujita A, Sato JR, Demasi MAA, Miyano S, Sogayar MC, Ferreira CE. An introduction to time‐varying connectivity estimation for gene regulatory networks [Internet]. In: Medical biostatistics for complex diseases. Weinheim: Wiley-Blackwell; 2010. [citado 2024 jun. 05 ] Available from: https://doi.org/10.1002/9783527630332.ch11
    • Vancouver

      Fujita A, Sato JR, Demasi MAA, Miyano S, Sogayar MC, Ferreira CE. An introduction to time‐varying connectivity estimation for gene regulatory networks [Internet]. In: Medical biostatistics for complex diseases. Weinheim: Wiley-Blackwell; 2010. [citado 2024 jun. 05 ] Available from: https://doi.org/10.1002/9783527630332.ch11
  • Source: Proceedings. Conference titles: International Conference on Genome Informatics (GIW). Unidade: IQ

    Subjects: REPRODUTIBILIDADE DE RESULTADOS, CONTROLE DA QUALIDADE

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      FUJITA, André et al. Quality control and reproducibility in DNA microarray experiments. 2009, Anais.. Tokyo: University of Tokyo, Korea advanced Institute of Science & Technology, Keio University, 2009. . Acesso em: 05 jun. 2024.
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      Fujita, A., Sato, J. R., Silva, F. H. L. da, Galvão, M. C., Sogayar, M. C., & Miyano, S. (2009). Quality control and reproducibility in DNA microarray experiments. In Proceedings. Tokyo: University of Tokyo, Korea advanced Institute of Science & Technology, Keio University.
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      Fujita A, Sato JR, Silva FHL da, Galvão MC, Sogayar MC, Miyano S. Quality control and reproducibility in DNA microarray experiments. Proceedings. 2009 ;[citado 2024 jun. 05 ]
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      Fujita A, Sato JR, Silva FHL da, Galvão MC, Sogayar MC, Miyano S. Quality control and reproducibility in DNA microarray experiments. Proceedings. 2009 ;[citado 2024 jun. 05 ]
  • Source: Journal of Bioinformatics and Computational Biology. Unidades: IQ, IME

    Subjects: EXPRESSÃO GÊNICA, BIOQUÍMICA

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      FUJITA, André et al. Comparing Pearson, Spearman and Hoeffding's D measure for gene expression association analysis. Journal of Bioinformatics and Computational Biology, v. 7, n. 4, p. 663-684, 2009Tradução . . Disponível em: https://doi.org/10.1142/S0219720009004230. Acesso em: 05 jun. 2024.
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      Fujita, A., Sato, J. R., Demasi, M. A. A., Sogayar, M. C., Ferreira, C. E., & Miyano, S. (2009). Comparing Pearson, Spearman and Hoeffding's D measure for gene expression association analysis. Journal of Bioinformatics and Computational Biology, 7( 4), 663-684. doi:10.1142/S0219720009004230
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      Fujita A, Sato JR, Demasi MAA, Sogayar MC, Ferreira CE, Miyano S. Comparing Pearson, Spearman and Hoeffding's D measure for gene expression association analysis [Internet]. Journal of Bioinformatics and Computational Biology. 2009 ; 7( 4): 663-684.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1142/S0219720009004230
    • Vancouver

      Fujita A, Sato JR, Demasi MAA, Sogayar MC, Ferreira CE, Miyano S. Comparing Pearson, Spearman and Hoeffding's D measure for gene expression association analysis [Internet]. Journal of Bioinformatics and Computational Biology. 2009 ; 7( 4): 663-684.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1142/S0219720009004230
  • Source: Journal of Bioinformatics and Computational Biology. Unidades: EACH, IQ, IME

    Subjects: EXPRESSÃO GÊNICA, BIOQUÍMICA

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      FUJITA, André et al. Modeling nonlinear gene regulatory networks from time series gene expression data. Journal of Bioinformatics and Computational Biology, v. 6, n. 5, p. 961-979, 2008Tradução . . Disponível em: https://doi.org/10.1142/s0219720008003746. Acesso em: 05 jun. 2024.
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      Fujita, A., Sato, J. R., Garay-Malpartida, H. M., Sogayar, M. C., Ferreira, C. E., & Miyano, S. (2008). Modeling nonlinear gene regulatory networks from time series gene expression data. Journal of Bioinformatics and Computational Biology, 6( 5), 961-979. doi:10.1142/s0219720008003746
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      Fujita A, Sato JR, Garay-Malpartida HM, Sogayar MC, Ferreira CE, Miyano S. Modeling nonlinear gene regulatory networks from time series gene expression data [Internet]. Journal of Bioinformatics and Computational Biology. 2008 ; 6( 5): 961-979.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1142/s0219720008003746
    • Vancouver

      Fujita A, Sato JR, Garay-Malpartida HM, Sogayar MC, Ferreira CE, Miyano S. Modeling nonlinear gene regulatory networks from time series gene expression data [Internet]. Journal of Bioinformatics and Computational Biology. 2008 ; 6( 5): 961-979.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1142/s0219720008003746
  • Source: BMC Systems Biology. Unidade: IQ

    Subjects: NEOPLASIAS PROSTÁTICAS, EXPRESSÃO GÊNICA

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      FUJITA, André et al. Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates. BMC Systems Biology, v. 2, n. 106, 2008Tradução . . Disponível em: https://doi.org/10.1186/1752-0509-2-106. Acesso em: 05 jun. 2024.
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      Fujita, A., Gomes, L. R., Sato, J. R., Yamaguchi, R., Thomaz, C. E., Sogayar, M. C., & Miyano, S. (2008). Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates. BMC Systems Biology, 2( 106). doi:10.1186/1752-0509-2-106
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      Fujita A, Gomes LR, Sato JR, Yamaguchi R, Thomaz CE, Sogayar MC, Miyano S. Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates [Internet]. BMC Systems Biology. 2008 ; 2( 106):[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1752-0509-2-106
    • Vancouver

      Fujita A, Gomes LR, Sato JR, Yamaguchi R, Thomaz CE, Sogayar MC, Miyano S. Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates [Internet]. BMC Systems Biology. 2008 ; 2( 106):[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1752-0509-2-106
  • Source: BMC Systems Biology. Unidades: IQ, IME, BIOINFORMÁTICA

    Subjects: EXPRESSÃO GÊNICA, BIOQUÍMICA

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      FUJITA, André et al. Modeling gene expression regulatory networks with the sparse vector autoregressive model. BMC Systems Biology, v. 1, n. 39, p. 1-11, 2007Tradução . . Disponível em: https://doi.org/10.1186/1752-0509-1-39. Acesso em: 05 jun. 2024.
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      Fujita, A., Sato, J. R., Garay-Malpartida, H. M., Yamaguchi, R., Miyano, S., Sogayar, M. C., & Ferreira, C. E. (2007). Modeling gene expression regulatory networks with the sparse vector autoregressive model. BMC Systems Biology, 1( 39), 1-11. doi:10.1186/1752-0509-1-39
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      Fujita A, Sato JR, Garay-Malpartida HM, Yamaguchi R, Miyano S, Sogayar MC, Ferreira CE. Modeling gene expression regulatory networks with the sparse vector autoregressive model [Internet]. BMC Systems Biology. 2007 ; 1( 39): 1-11.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1752-0509-1-39
    • Vancouver

      Fujita A, Sato JR, Garay-Malpartida HM, Yamaguchi R, Miyano S, Sogayar MC, Ferreira CE. Modeling gene expression regulatory networks with the sparse vector autoregressive model [Internet]. BMC Systems Biology. 2007 ; 1( 39): 1-11.[citado 2024 jun. 05 ] Available from: https://doi.org/10.1186/1752-0509-1-39

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