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Extension of the core map of common bean with EST-SSR, RGA, AFLP, and putative functional markers (2010)

  • Authors:
  • USP affiliated authors: CAMARGO, LUIS EDUARDO ARANHA - ESALQ ; MUI, TSAI SIU - CENA ; VIEIRA, MARIA LUCIA CARNEIRO - ESALQ
  • USP Schools: ESALQ; CENA; ESALQ
  • DOI: 10.1007/s11032-009-9306-7
  • Subjects: MAPEAMENTO GENÉTICO; MARCADOR MOLECULAR
  • Language: Inglês
  • Imprenta:
  • Source:
    • Título do periódico: Molecular Breeding
    • Volume/Número/Paginação/Ano: v. 25, p. 25-45, 2010
  • Acesso online ao documento

    DOI or search this record in
    Informações sobre o DOI: 10.1007/s11032-009-9306-7 (Fonte: oaDOI API)
    • Este periódico é de assinatura
    • Este artigo é de acesso aberto
    • URL de acesso aberto
    • Cor do Acesso Aberto: hybrid
    • Licença: cc-by-nc
    Informações sobre o Citescore
  • Título: Molecular Breeding

    ISSN: 1380-3743

    Citescore - 2017: 2.55

    SJR - 2017: 1.139

    SNIP - 2017: 0.999


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    • ABNT

      HANAI, Luiz Ricardo; SANTINI, Luciane; CAMARGO, Luis Eduardo Aranha; et al. Extension of the core map of common bean with EST-SSR, RGA, AFLP, and putative functional markers. Molecular Breeding, Heidelberg, v. 25, p. 25-45, 2010. DOI: 10.1007/s11032-009-9306-7.
    • APA

      Hanai, L. R., Santini, L., Camargo, L. E. A., Fungaro, M. H. P., Gepts, P., Tsai, S. M., & Vieira, M. L. C. (2010). Extension of the core map of common bean with EST-SSR, RGA, AFLP, and putative functional markers. Molecular Breeding, 25, 25-45. doi:10.1007/s11032-009-9306-7
    • NLM

      Hanai LR, Santini L, Camargo LEA, Fungaro MHP, Gepts P, Tsai SM, Vieira MLC. Extension of the core map of common bean with EST-SSR, RGA, AFLP, and putative functional markers. Molecular Breeding. 2010 ; 25 25-45.
    • Vancouver

      Hanai LR, Santini L, Camargo LEA, Fungaro MHP, Gepts P, Tsai SM, Vieira MLC. Extension of the core map of common bean with EST-SSR, RGA, AFLP, and putative functional markers. Molecular Breeding. 2010 ; 25 25-45.

    Referências citadas na obra
    Adam-Blondon AF, Sevignac M, Bannerot H, Dron M (1994) SCAR, RAPD and RFLP markers linked to a dominant gene (Are) conferring resistance to anthracnose in common bean. Theor Appl Genet 88:865–870
    Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410
    Benchimol LL, de Campos T, Carbonell SAM, Colombo CA, Chioratto AF, Formighieri EF, Gouvea LRL, de Souza AP (2007) Structure of genetic diversity among common bean (Phaseolus vulgaris L.) varieties of Mesoamerican and Andean origins using new developed microsatellite markers. Genet Resour Crop Evol 54:1747–1762
    Blair MW, Pedraza F, Buendia HF, Gaitan-Solis E, Beebe SE, Gepts P, Tohme J (2003) Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.). Theor Appl Genet 107:1362–1374
    Broughton WJ, Hernandez G, Blair M, Beebe S, Gepts P, Vanderleyden J (2003) Beans (Phaseolus spp.)—model food legumes. Plant Soil 252:55–128
    Brugmans B, Wouters D, van Os H, Hutten R, van der Linden G, Visser R, van Eck H, van der Vossen E (2008) Genetic mapping and transcription analyses of resistance gene loci in potato using NBS profiling. Theor Appl Genet 117:1379–1388
    Buso GSC, Amaral ZPS, Brondani RPV, Ferreira ME (2006) Microsatellite markers for the common bean Phaseolus vulgaris. Mol Ecol Notes 6:252–254
    Caixeta ET, Borém A, Kelly JD (2005) Development of microsatellite markers based on BAC common bean clones. Crop Breed Appl Biotechnol 5:125–133
    Campos T, Benchimol LL, Carbonell SAM, Chioratto AF, Formighieri EF, de Souza AP (2007) Microsatellites for genetic studies and breeding programs in common bean. Pesqui Agropecu Bras 42:589–592
    Cardoso JMK, Oblessuc PR, de Campos T, Sforça DA, Carbonell SAM, Chioratto AF, Formighieri EF, de Souza AP, Benchimol LL (2008) New microsatellite markers developed from an enriched microsatellite common bean library. Pesqui Agropecu Bras 43:929–936
    Creste S, Tulmann-Neto A, Figueira A (2001) Detection of single sequence repeat polymorphisms in denaturing polyacrylamide sequencing gels by silver staining. Plant Mol Biol Report 19:1–8
    Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure to small amounts of fresh leaf tissue. Phytochem Bull 19:11–15
    Fang Y, You J, Xie K, Xie W, Xiong L (2008) Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol Genet Genomics 280:547–563
    Ferrier-Cana E, Geffroy V, Macadre C, Creusot F, Imbert-Bollore P, Sevignac M, Langin T (2003) Characterization of expressed NBS-LRR resistance gene candidates from common bean. Theor Appl Genet 106:251–261
    Flandez-Galvez H, Ades PK, Ford R, Pang ECK, Taylor PWJ (2003) QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.). Theor Appl Genet 107:1257–1265
    Freyre R, Skroch PW, Geffroy V et al (1998) Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP. Theor Appl Genet 97:847–856
    Gaitán-Solís E, Duque MC, Edwards KJ, Tohme J (2002) Microsatellite repeats in common bean (Phaseolus vulgaris): isolation, characterization, and cross-species amplification in Phaseolus ssp. Crop Sci 42:2128–2136
    Gepts P (1998) Origin and evolution of common bean: past events and recent trends. Hortscience 33:1124–1130
    Grisi MCM, Blair MW, Gepts P, Brondani C, Pereira PAA, Brondani RPV (2007) Genetic mapping of a new set of microsatellite markers in a reference common bean (Phaseolus vulgaris) population BAT93 × Jalo EEP558. Genet Mol Res 6:691–706
    Guerra-Sanz JM (2004) New SSR markers of Phaseolus vulgaris from sequence databases. Plant Breed 123:87–89
    Han OK, Kaga A, Isemura T, Wang XW, Tomooka N, Vaughan DA (2005) A genetic linkage map for azuki bean [Vigna angularis (Willd.) Ohwi & Ohashi]. Theor Appl Genet 111:1278–1287
    Hanai LR, Campos T, Camargo LEA, Benchimol LL, de Souza AP, Melotto M, Carbonell SAM, Chioratto AF, Consoli L, Formighieri EF, Siqueira M, Tsai SM, Vieira MLC (2007) Development, characterization, and comparative analysis of polymorphism at common bean SSR loci isolated from genic and genomic sources. Genome 50:266–277
    Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends Ecol Evol 11:424–429
    Kanazin V, Marek LF, Shoemaker RC (1996) Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci USA 93:11746–11750
    Koinange EMK, Singh SP, Gepts P (1996) Genetic control of the domestication syndrome in common bean. Crop Sci 36:1037–1045
    Kosambi DD (1944) The estimation of map distance from recombination values. Annu Eugenetics 12:172–175
    Lander ES, Botstein D (1989) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genet 121:185–199
    Lander E, Green P, Abrahamson J, Barlon A, Daley M, Lincoln S, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkages maps of experimental and natural populations. Genomics 1:174–181
    Li YC, Korol AB, Fahima T, Nevo E (2004) Microsatellites within genes: structure, function, and evolution. Mol Biol Evol 21:991–1007
    Lopes R, Lopes MTG, Carneiro MS, Pina Matta F, Camargo LEA, Vieira MLC (2006) Linkage and mapping of resistance genes to Xanthomonas axonopodis pv. passiflorae in yellow passion fruit. Genome 49:17–29
    López CE, Acosta IF, Jara C, Pedraza F, Gaitan-Solis E, Gallego G, Beebe S, Tohme J (2003) Identifying resistance gene analogs associated with resistances to different pathogens in common bean. Phytopathology 93:88–95
    Melotto M, Coelho M, Pedrosa-Harand A, Kelly J, Camargo LEA (2004) The anthracnose resistance locus Co-4 of common bean is located on chromosome 3 and contains putative disease resistance-related genes. Theor Appl Genet 109:690–699
    Métais I, Hamon B, Jalouzot R, Peltier D (2002) Structure and level of genetic diversity in various bean types evidenced with microsatellite markers isolated from a genomic enriched library. Theor Appl Genet 104:1346–1352
    Miklas PN, Coyne DP, Grafton KF, Mutlu N, Reiser J, Lindgren DT, Singh SP (2003) A major QTL for common bacterial blight resistance derives from the common bean great northern landrace cultivar Montana No. 5. Euphytica 131:137–146
    Miklas PN, Kelly J, Beebe S, Blair M (2006a) Common bean breeding for resistance against biotic and abiotic stresses: from classical to MAS breeding. Euphytica 147:105–131
    Miklas PN, Hu JG, Grunwald NJ, Larsen KM (2006b) Potential application of TRAP (targeted region amplified polymorphism) markers for mapping and tagging disease resistance traits in common bean. Crop Sci 46:910–916
    Moyle LC, Graham EB (2006) Genome-wide associations between hybrid sterility QTL and marker transmission ratio distortion. Mol Biol Evol 23:973–980
    Murray J, Larsen J, Michaels TE, Schaafsma A, Vallejos CE, Pauls KP (2002) Identification of putative genes in bean (Phaseolus vulgaris) genomic (Bng) RFLP clones and their conversion to STSs. Genome 45:1013–1024
    Mutlu N, Miklas PN, Coyne DP (2006) Resistance gene analog polymorphism (RGAP) markers co-localize with disease resistance genes and QTL in common bean. Mol Breed 17:127–135
    Nodari RO, Tsai SM, Gilbertson RL, Gepts P (1993a) Towards an integrated linkage map of common bean. 2. Development of an RFLP-based linkage map. Theor Appl Genet 85:513–520
    Nodari RO, Tsai SM, Guzmán P, Gilbertson RL, Gepts P (1993b) Towards an integrated linkage map of common bean. 3. Mapping genetic factors controlling host-bacteria interactions. Genetics 134:341–350
    Oliveira EJ, Pádua JG, Zucchi MI, Vencovsky R, Vieira MLC (2006) Origin, evolution and genome distribution of microsatellites. Genet Mol Biol 29:294–307
    Pedrosa-Harand A, Porch T, Gepts P (2008) Standard nomenclature for common bean chromosomes and linkage groups. Annu. Rept. Bean Improv. Coop. 51:106-107. http://www.css.msu.edu/bic/PDF/Standardized Genetic & Physical Bean Map 2008.pdf
    Rivkin MI, Vallejos CE, McClean PE (1999) Disease-resistance related sequences in common bean. Genome 42:41–47
    Rodrigues TB, dos Santos JB (2006) Effect of natural selection on common bean (Phaseolus vulgaris) microsatellite alleles. Genet Mol Biol 29:345–352
    Ryan CA, Huffaker A, Yamaguchi Y (2007) New insights into innate immunity in Arabidopsis. Cell Microbiol 9:1902–1908
    Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467
    Timmerman-Vaughan GM, Frew TJ, Russell AC, Khan T, Butler R, Gilpin M, Murray S, Falloon K (2002) QTL mapping of partial resistance to field epidemics of ascochyta blight of pea. Crop Sci 42:2100–2111
    Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, Grando MS, Velasco R (2007) A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring pinot noir bacterial artificial chromosome contigs. Genetics 176:2637–2650
    Vallejos CE, Sakiyama NS, Chase CD (1992) A molecular marker-based linkage map of Phaseolus-vulgaris L. Genetics 131:733–740
    Vallejos CE, Astua-Monge G, Jones V, Plyler TR, Sakiyama NS, Mackenzie SA (2006) Genetic and molecular characterization of the I locus of Phaseolus vulgaris. Genetics 172:1229–1242
    van der Hoorn RAL, Jones JD (2004) The plant proteolytic machinery and its role in defense. Curr Opin Plant Biol 7:400–407
    van der Linden CG, Wouters DCAE, Mihalka V, Kochieva EZ, Smulders MJM, Vosman B (2004) Efficient targeting of plant disease resistance loci using NBS profiling. Theor Appl Genet 109:384–393
    Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J. Heredity 93:77–78
    Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP—a new technique for DNA-fingerprinting. Nucleic Acids Res 23:4407–4414
    Yaish MWF, Pérez de la Vega M (2003) Isolation of (GA)n microsatellite sequences and description of a predicted MADS-box sequence isolated from common bean (Phaseolus vulgaris L.). Genet Mol Biol 26:337–342
    Young WP, Schupp JM, Keim P (1999) DNA methylation and AFLP marker distribution in the soybean genome. Theor Appl Genet 99:785–792
    Yu ZH, Stall RE, Vallejos CE (1998) Detection of genes for resistance to common bacterial blight of beans. Crop Sci 38:1290–1296
    Yu K, Park SJ, Poysa V (1999) Abundance and variation of microsatellite DNA sequences in beans (Phaseolus and Vigna). Genome 42:27–34
    Yu K, Park SJ, Poysa V, Gepts P (2000) Integration of simple sequence repeat (SSR) markers into a molecular linkage map of common bean (Phaseolus vulgaris L.). J Heredity 91:429–434